Package: DBTC 0.1.0

DBTC: Dada-BLAST-Taxon Assign-Condense Metabarcode Analysis

First using 'dada2' R tools to analyse metabarcode data, the 'DBTC' package then uses the BLAST algorithm to search unknown sequences against local databases, and then takes reduced matched results and provides best taxonomic assignments.

Authors:Robert G Young [aut, cre, cph]

DBTC_0.1.0.tar.gz
DBTC_0.1.0.zip(r-4.7-any)DBTC_0.1.0.zip(r-4.6-any)DBTC_0.1.0.zip(r-4.5-any)
DBTC_0.1.0.tgz(r-4.6-any)DBTC_0.1.0.tgz(r-4.5-any)
DBTC_0.1.0.tar.gz(r-4.7-any)DBTC_0.1.0.tar.gz(r-4.6-any)
DBTC_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
DBTC/json (API)

# Install 'DBTC' in R:
install.packages('DBTC', repos = c('https://rgyoung6.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rgyoung6/dbtc/issues

On CRAN:

Conda:

2.70 score 346 downloads 8 exports 75 dependencies

Last updated from:3ae1edee16. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK249
source / vignettesOK229
linux-releaseOK224
macos-releaseOK294
macos-oldrelOK211
windows-develOK204
windows-releaseOK196
windows-oldrelOK198
wasm-releaseOK153

Exports:combine_assign_outputcombine_dada_outputcombine_reduced_outputdada_implementmake_BLAST_DBreduce_taxaseq_BLASTtaxon_assign

Dependencies:BHBiobaseBiocGenericsBiocParallelBiostringsbitbit64bitopsblobcachemcigarilloclicodetoolscpp11crayoncurldada2data.tableDBIdeldirfarverfastmapformatRfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicRangesggplot2gluegtablehwriterinterpIRangesisobandjpeglabelinglambda.rlatticelatticeExtralifecyclemagrittrMASSmemoisepbapplypkgconfigplyrpngpwalignR.methodsS3R.ooR.utilsR6RColorBrewerRcppRcppEigenRcppParallelreshape2RhtslibrlangRsamtoolsRSQLiteS4VectorsS7scalesSeqinfoShortReadsnowstringistringrtaxonomizrvctrsviridisLitewithrXVector