Package: DBTC 0.1.0

DBTC: Dada-BLAST-Taxon Assign-Condense Metabarcode Analysis

First using 'dada2' R tools to analyse metabarcode data, the 'DBTC' package then uses the BLAST algorithm to search unknown sequences against local databases, and then takes reduced matched results and provides best taxonomic assignments.

Authors:Robert G Young [aut, cre, cph]

DBTC_0.1.0.tar.gz
DBTC_0.1.0.zip(r-4.7)DBTC_0.1.0.zip(r-4.6)DBTC_0.1.0.zip(r-4.5)
DBTC_0.1.0.tgz(r-4.6-any)DBTC_0.1.0.tgz(r-4.5-any)
DBTC_0.1.0.tar.gz(r-4.7-any)DBTC_0.1.0.tar.gz(r-4.6-any)
DBTC_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
DBTC/json (API)

# Install 'DBTC' in R:
install.packages('DBTC', repos = c('https://rgyoung6.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rgyoung6/dbtc/issues

On CRAN:

Conda:

2.70 score 539 downloads 8 exports 83 dependencies

Last updated from:3ae1edee16. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK310
source / vignettesOK193
linux-release-x86_64OK326
macos-release-arm64OK260
macos-oldrel-arm64OK334
windows-develOK321
windows-releaseOK267
windows-oldrelOK240
wasm-releaseOK193

Exports:combine_assign_outputcombine_dada_outputcombine_reduced_outputdada_implementmake_BLAST_DBreduce_taxaseq_BLASTtaxon_assign

Dependencies:abindBHBiobaseBiocGenericsBiocParallelBiostringsbitbit64bitopsblobcachemcigarilloclicodetoolscpp11crayoncurldada2data.tableDBIDelayedArraydeldirfarverfastmapformatRfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicRangesggplot2gluegtablehwriterinterpIRangesisobandjpeglabelinglambda.rlatticelatticeExtralifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisepbapplypkgconfigplyrpngpwalignR.methodsS3R.ooR.utilsR6RColorBrewerRcppRcppEigenRcppParallelreshape2RhtslibrlangRsamtoolsRSQLiteS4ArraysS4VectorsS7scalesSeqinfoShortReadsnowSparseArraystringistringrSummarizedExperimenttaxonomizrvctrsviridisLitewithrXVector