Package 'DBTCShiny'

Title: Dada-BLAST-Taxon Assign-Condense Metabarcode Analysis 'shiny' Application
Description: Metabarcoding analysis using the 'DBTC' package is implemented here using 'shiny' in an interactive graphical user interface to conduct Metabarcode analyses and visualize and filter results.
Authors: Robert G Young [aut, cre, cph]
Maintainer: Robert G Young <[email protected]>
License: GPL-2 | GPL-3
Version: 0.1.3
Built: 2025-01-31 06:11:54 UTC
Source: https://github.com/rgyoung6/dbtcshiny

Help Index

Launch DBTCShiny

Description

This function launches the DBTCShiny Application

Usage

launchDBTCShiny(verbose = TRUE)

Arguments

verbose

If set to TRUE then there will be output to the R console, if FALSE then this reporting data is suppressed (Default TRUE).

Details

This function launches a DBTCShiny Application which allows a user to run the 'DBTC' functions and process high throughput sequencing data.

Value

There are no values or files returned from this function

Note

This is a wrapper function which launches the DBTCShiny package as a 'Shiny' application in the systems default browser program

Author(s)

Robert G. Young

References

<https://github.com/rgyoung6/DBTC> Young, R. G., Hanner, R. H. (Submitted October 2023). Metabarcoding analysis using Dada-BLAST-Taxon Assign-Condense shiny Application (DBTCShiny). Biodiversity Data Journal.

See Also

dada_implement() combine_dada_output() make_BLAST_DB() seq_BLAST() taxon_assign() combine_assign_output() reduce_taxa() combine_reduced_output()

Examples

if(interactive()){
launchDBTCShiny()
}