{
  "_id": "6a22a344cd65a98ecbd5932b",
  "Package": "MACER",
  "Type": "Package",
  "Title": "Molecular Acquisition, Cleaning, and Evaluation in R 'MACER'",
  "Version": "0.2.2",
  "Authors@R": "c(person(given = \"Robert G\",\nfamily = \"Young\",\nrole = c(\"aut\", \"cre\", \"cph\"),\nemail = \"rgyoung6@gmail.com\",\ncomment = c(\"ORCID\" = \"0000-0002-6731-2506\")),\nperson(given = \"Rekkab\",\nfamily = \"Gill\",\nrole = c(\"aut\"),\nemail = \"rekkab@uoguelph.ca\"),\nperson(given = \"Daniel\",\nfamily = \"Gillis\",\nrole = c(\"aut\"),\nemail = \"dgillis@uoguelph.ca\"),\nperson(given = \"Robert H\",\nfamily = \"Hanner\",\nrole = c(\"aut\", \"cph\"),\nemail = \"rhanner@uoguelph.ca\"))",
  "Maintainer": "Robert G Young <rgyoung6@gmail.com>",
  "Description": "To assist biological researchers in assembling\ntaxonomically and marker focused molecular sequence data sets.\n'MACER' accepts a list of genera as a user input and uses\nNCBI-GenBank and BOLD as resources to download and assemble\nmolecular sequence datasets. These datasets are then assembled\nby marker, aligned, trimmed, and cleaned. The use of this\npackage allows the publication of specific parameters to ensure\nreproducibility. The 'MACER' package has four core functions\nand an example run through using all of these functions can be\nfound in the associated repository\n<https://github.com/rgyoung6/MACER_example>.",
  "License": "GPL-2 | GPL-3",
  "Encoding": "UTF-8",
  "URL": "<https://github.com/rgyoung6/MACER>",
  "Language": "en-GB",
  "RoxygenNote": "7.2.3",
  "Config/pak/sysreqs": "libpng-dev libxml2-dev libssl-dev",
  "Repository": "https://rgyoung6.r-universe.dev",
  "Date/Publication": "2023-11-16 12:11:37 UTC",
  "RemoteUrl": "https://github.com/rgyoung6/macer",
  "RemoteRef": "HEAD",
  "RemoteSha": "225963fc13452ef21dc5291e66a444844f955d96",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-05 10:17:52 UTC",
    "User": "root"
  },
  "Author": "Robert G Young [aut, cre, cph] (ORCID:\n<https://orcid.org/0000-0002-6731-2506>),\nRekkab Gill [aut],\nDaniel Gillis [aut],\nRobert H Hanner [aut, cph]",
  "MD5sum": "99d20fec37582df5faec8f87c4faddd2",
  "_user": "rgyoung6",
  "_type": "src",
  "_file": "MACER_0.2.2.tar.gz",
  "_fileid": "825b53d380ce42cc32e3d620d238945febd725d34b2ba7309275c86513e66568",
  "_filesize": 130993,
  "_sha256": "825b53d380ce42cc32e3d620d238945febd725d34b2ba7309275c86513e66568",
  "_created": "2026-06-05T10:17:52.000Z",
  "_published": "2026-06-05T10:21:56.948Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79708411144,
      "time": 124,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7434261453"
    },
    {
      "job": 79708411173,
      "time": 128,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7434262347"
    },
    {
      "job": 79708411171,
      "time": 214,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7434278492"
    },
    {
      "job": 79708411175,
      "time": 189,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7434271122"
    },
    {
      "job": 79708003256,
      "time": 172,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7434225337"
    },
    {
      "job": 79708411178,
      "time": 115,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7434258901"
    },
    {
      "job": 79708411187,
      "time": 86,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7434250788"
    },
    {
      "job": 79708411197,
      "time": 88,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7434251112"
    },
    {
      "job": 79708411276,
      "time": 89,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7434251396"
    }
  ],
  "_buildurl": "https://github.com/r-universe/rgyoung6/actions/runs/27009084811",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/rgyoung6/macer",
  "_commit": {
    "id": "225963fc13452ef21dc5291e66a444844f955d96",
    "author": "rgyoung6 <60077841+rgyoung6@users.noreply.github.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Update README.md",
    "time": 1700136697
  },
  "_maintainer": {
    "name": "Robert G Young",
    "email": "rgyoung6@gmail.com",
    "login": "rgyoung6",
    "description": "",
    "uuid": 60077841,
    "orcid": "0000-0002-6731-2506"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "rentrez",
      "role": "Imports"
    },
    {
      "package": "ape",
      "role": "Imports"
    },
    {
      "package": "httr",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "parallel",
      "role": "Imports"
    },
    {
      "package": "pbapply",
      "role": "Imports"
    },
    {
      "package": "grDevices",
      "role": "Imports"
    },
    {
      "package": "png",
      "role": "Imports"
    }
  ],
  "_owner": "rgyoung6",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 2,
  "_contributors": [
    {
      "user": "rgyoung6",
      "count": 181,
      "uuid": 60077841
    }
  ],
  "_userbio": {
    "uuid": 60077841,
    "type": "user",
    "name": "rgyoung6"
  },
  "_downloads": {
    "count": 730,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/MACER"
  },
  "_mentions": 1,
  "_devurl": "https://github.com/rgyoung6/macer",
  "_searchresults": 3,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/MACER.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/rgyoung6/macer",
  "_realowner": "rgyoung6",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2021-07-05"
    },
    {
      "version": "0.1.1",
      "date": "2021-09-08"
    },
    {
      "version": "0.2.0",
      "date": "2022-10-04"
    },
    {
      "version": "0.2.1",
      "date": "2022-12-03"
    }
  ],
  "_exports": [
    "align_to_ref",
    "auto_seq_download",
    "barcode_clean",
    "create_fastas"
  ],
  "_help": [
    {
      "page": "align_to_ref",
      "title": "Align and Trim MSA Against a Reference",
      "topics": [
        "align_to_ref"
      ]
    },
    {
      "page": "auto_seq_download",
      "title": "Automatic Sequence Download",
      "topics": [
        "auto_seq_download"
      ]
    },
    {
      "page": "barcode_clean",
      "title": "DNA Barcode Clean",
      "topics": [
        "barcode_clean"
      ]
    },
    {
      "page": "create_fastas",
      "title": "Table To FASTA",
      "topics": [
        "create_fastas"
      ]
    }
  ],
  "_readme": "https://github.com/rgyoung6/macer/raw/HEAD/README.md",
  "_rundeps": [
    "ape",
    "askpass",
    "cli",
    "cpp11",
    "curl",
    "digest",
    "farver",
    "ggplot2",
    "glue",
    "gtable",
    "httr",
    "isoband",
    "jsonlite",
    "labeling",
    "lattice",
    "lifecycle",
    "mime",
    "nlme",
    "openssl",
    "pbapply",
    "png",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "rentrez",
    "rlang",
    "S7",
    "scales",
    "sys",
    "vctrs",
    "viridisLite",
    "withr",
    "XML"
  ],
  "_score": 3,
  "_indexed": true,
  "_nocasepkg": "macer",
  "_universes": [
    "rgyoung6"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.2.2",
      "date": "2026-06-05T10:19:48.000Z",
      "distro": "noble",
      "commit": "225963fc13452ef21dc5291e66a444844f955d96",
      "fileid": "21189f86829be4cc5382e9689bc12e279d00436604811b5fd07530c6bc95a349",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rgyoung6/actions/runs/27009084811"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.2.2",
      "date": "2026-06-05T10:19:50.000Z",
      "distro": "noble",
      "commit": "225963fc13452ef21dc5291e66a444844f955d96",
      "fileid": "49e9adaee2d10f58c494ef953cc4bb49baa49236f4124260f4603a08460314ac",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rgyoung6/actions/runs/27009084811"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.2.2",
      "date": "2026-06-05T10:20:48.000Z",
      "commit": "225963fc13452ef21dc5291e66a444844f955d96",
      "fileid": "0ac68ec42bfa1f4d7edec0e9d4341246021606b3e953b4d43cdb9968703997c0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rgyoung6/actions/runs/27009084811"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.2.2",
      "date": "2026-06-05T10:20:24.000Z",
      "commit": "225963fc13452ef21dc5291e66a444844f955d96",
      "fileid": "98e62eda98eed9df41a4d49ee1d3464c3e0d304fe33e0ae35b8670dee3d95c2f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rgyoung6/actions/runs/27009084811"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.2.2",
      "date": "2026-06-05T10:20:03.000Z",
      "commit": "225963fc13452ef21dc5291e66a444844f955d96",
      "fileid": "607f249498393077eeb5206347d94b53ed9d48ef643acc0a94d3ce4f1a7298cf",
      "status": "success",
      "buildurl": "https://github.com/r-universe/rgyoung6/actions/runs/27009084811"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.2.2",
      "date": "2026-06-05T10:19:03.000Z",
      "commit": "225963fc13452ef21dc5291e66a444844f955d96",
      "fileid": "4e1f1d0391fcebabb82de914660d57a5bb8c16b943411e716e3a353c4618d158",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rgyoung6/actions/runs/27009084811"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.2.2",
      "date": "2026-06-05T10:19:03.000Z",
      "commit": "225963fc13452ef21dc5291e66a444844f955d96",
      "fileid": "a5078910ca2daf47fca0a9841e5844f576459f23c699fbab28acfede007c4ab7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rgyoung6/actions/runs/27009084811"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.2.2",
      "date": "2026-06-05T10:19:07.000Z",
      "commit": "225963fc13452ef21dc5291e66a444844f955d96",
      "fileid": "42396e41e151a1e5123e253b3e430a4e201f2c5f6183852484812f8cef58af5d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rgyoung6/actions/runs/27009084811"
    }
  ]
}