Package: MACER 0.2.2

MACER: Molecular Acquisition, Cleaning, and Evaluation in R 'MACER'

To assist biological researchers in assembling taxonomically and marker focused molecular sequence data sets. 'MACER' accepts a list of genera as a user input and uses NCBI-GenBank and BOLD as resources to download and assemble molecular sequence datasets. These datasets are then assembled by marker, aligned, trimmed, and cleaned. The use of this package allows the publication of specific parameters to ensure reproducibility. The 'MACER' package has four core functions and an example run through using all of these functions can be found in the associated repository <https://github.com/rgyoung6/MACER_example>.

Authors:Robert G Young [aut, cre, cph], Rekkab Gill [aut], Daniel Gillis [aut], Robert H Hanner [aut, cph]

MACER_0.2.2.tar.gz
MACER_0.2.2.zip(r-4.7)MACER_0.2.2.zip(r-4.6)MACER_0.2.2.zip(r-4.5)
MACER_0.2.2.tgz(r-4.6-any)MACER_0.2.2.tgz(r-4.5-any)
MACER_0.2.2.tar.gz(r-4.7-any)MACER_0.2.2.tar.gz(r-4.6-any)
MACER_0.2.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
MACER/json (API)

# Install 'MACER' in R:
install.packages('MACER', repos = c('https://rgyoung6.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rgyoung6/macer/issues

On CRAN:

Conda:

3.00 score 2 stars 3 scripts 730 downloads 1 mentions 4 exports 33 dependencies

Last updated from:225963fc13. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK124
source / vignettesOK172
linux-release-x86_64OK128
macos-release-arm64OK189
macos-oldrel-arm64OK214
windows-develOK86
windows-releaseOK89
windows-oldrelOK88
wasm-releaseOK115

Exports:align_to_refauto_seq_downloadbarcode_cleancreate_fastas

Dependencies:apeaskpassclicpp11curldigestfarverggplot2gluegtablehttrisobandjsonlitelabelinglatticelifecyclemimenlmeopensslpbapplypngR6RColorBrewerRcpprentrezrlangS7scalessysvctrsviridisLitewithrXML