Package: MACER 0.2.2

MACER: Molecular Acquisition, Cleaning, and Evaluation in R 'MACER'

To assist biological researchers in assembling taxonomically and marker focused molecular sequence data sets. 'MACER' accepts a list of genera as a user input and uses NCBI-GenBank and BOLD as resources to download and assemble molecular sequence datasets. These datasets are then assembled by marker, aligned, trimmed, and cleaned. The use of this package allows the publication of specific parameters to ensure reproducibility. The 'MACER' package has four core functions and an example run through using all of these functions can be found in the associated repository <https://github.com/rgyoung6/MACER_example>.

Authors:Robert G Young [aut, cre, cph], Rekkab Gill [aut], Daniel Gillis [aut], Robert H Hanner [aut, cph]

MACER_0.2.2.tar.gz
MACER_0.2.2.zip(r-4.7-any)MACER_0.2.2.zip(r-4.6-any)MACER_0.2.2.zip(r-4.5-any)
MACER_0.2.2.tgz(r-4.6-any)MACER_0.2.2.tgz(r-4.5-any)
MACER_0.2.2.tar.gz(r-4.7-any)MACER_0.2.2.tar.gz(r-4.6-any)
MACER_0.2.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
MACER/json (API)

# Install 'MACER' in R:
install.packages('MACER', repos = c('https://rgyoung6.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rgyoung6/macer/issues

On CRAN:

Conda:

3.00 score 2 stars 3 scripts 445 downloads 1 mentions 4 exports 33 dependencies

Last updated from:225963fc13. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK142
source / vignettesOK185
linux-releaseOK136
macos-releaseOK87
macos-oldrelOK83
windows-develOK79
windows-releaseOK78
windows-oldrelOK79
wasm-releaseOK106

Exports:align_to_refauto_seq_downloadbarcode_cleancreate_fastas

Dependencies:apeaskpassclicpp11curldigestfarverggplot2gluegtablehttrisobandjsonlitelabelinglatticelifecyclemimenlmeopensslpbapplypngR6RColorBrewerRcpprentrezrlangS7scalessysvctrsviridisLitewithrXML