Package: MACER 0.2.2

MACER: Molecular Acquisition, Cleaning, and Evaluation in R 'MACER'

To assist biological researchers in assembling taxonomically and marker focused molecular sequence data sets. 'MACER' accepts a list of genera as a user input and uses NCBI-GenBank and BOLD as resources to download and assemble molecular sequence datasets. These datasets are then assembled by marker, aligned, trimmed, and cleaned. The use of this package allows the publication of specific parameters to ensure reproducibility. The 'MACER' package has four core functions and an example run through using all of these functions can be found in the associated repository <https://github.com/rgyoung6/MACER_example>.

Authors:Robert G Young [aut, cre, cph], Rekkab Gill [aut], Daniel Gillis [aut], Robert H Hanner [aut, cph]

MACER_0.2.2.tar.gz
MACER_0.2.2.zip(r-4.5)MACER_0.2.2.zip(r-4.4)MACER_0.2.2.zip(r-4.3)
MACER_0.2.2.tgz(r-4.4-any)MACER_0.2.2.tgz(r-4.3-any)
MACER_0.2.2.tar.gz(r-4.5-noble)MACER_0.2.2.tar.gz(r-4.4-noble)
MACER_0.2.2.tgz(r-4.4-emscripten)MACER_0.2.2.tgz(r-4.3-emscripten)
MACER.pdf |MACER.html✨
MACER/json (API)

Peer review:

Bug tracker:https://github.com/rgyoung6/macer/issues

On CRAN:

4 exports 2 stars 1.26 score 42 dependencies 1 mentions 3 scripts 1.2k downloads

Last updated 10 months agofrom:225963fc13. Checks:OK: 7. Indexed: yes.

Exports:align_to_refauto_seq_downloadbarcode_cleancreate_fastas

Dependencies:apeaskpassclicolorspacecurldigestfansifarverggplot2gluegtablehttrisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmgcvmimemunsellnlmeopensslpbapplypillarpkgconfigpngR6RColorBrewerRcpprentrezrlangscalessystibbleutf8vctrsviridisLitewithrXML